Biogeographic ancestry and endophenotypes, etc.

There are a couple of new, well designed, obtainable, surveys out — with ancestry, MRI, and cognitive data – which should allow for the (dis)confirmation of certain conjectures of ill repute:

–Neurodevelopmental Genomics: Trajectories of Complex Phenotypes (age 8-21, N ~ 10,000)
–The Brain Genomics Superstruct Project (age 18-35, N ~ 1,500)

For example, Greg Cochran likes to go on about how major ancestry groups often differ in crude brain morphology, and how these differences probably explain a significant chunk (> 20%) of bio-ancestry related differences in CA. I doubt it. But if he agrees to specify the analytic strategy, I will try to get the data and run the analyses.

I did look through the PING survey (age 3-21, N ~ 1,500) – which might not be very informative owing to the age structure. Going by this, Greg seems to be more or less correct about some of the endo differences and probably about their origins. As an example, Figure 1 & 2 show the B/W diffs for intracranial and total brain volume by age. (AAs are picked out for illustration since they are the largest non-White ethnic group, showing the biggest deviation from Whites.) And Figure 3 shows the relation between brain volume and ancestry in the self-identified AA group; the results were basically the same for intracranial volume, etc. — and so not shown.

Yet, as seen in Table 1 &  2, CA was more or less uncorrelated with these particular endophenotypes (r = 0.07-0.08); unsurprisingly, CA explained virtually no endo differences, and vice versa. Yet, CA was strongly (negatively) associated with both African and Amerindian ancestry – and also, though to a lesser degree, with Oceanian.

Perhaps there is a more sound way to run the numbers? Or a better way to take into account age? Dunno, it’s not my position to defend.

Results below.
I applied the same method as in this analysis. The models are: (1) Biogeographic ancestry (BGA); (2): Self-identified race/ethnicity (SIRE); (3): BGA + SIRE (4); BGA + SIRE + CA.

Figure 1.

Figure1

 

 

 

 

 

 

Figure 2.

Figure2

 

 

 

 

 

 

Figure 3.

Image 3

 

 

 

 

 

 

Table 1.
Table 1

 

 

 

 

 

 

 

Table 2.
Table 2

 

 

 

 

 

 

 

 

1 Comment

  1. Eric Orcadian

    I need to make a few donations before the end of the year and I’m considering adding HPDF to the list issuing a check to the 501(c)(3). Is this charity still active and may the check be sent to the address in North Olmstead, Ohio?

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